Martin-Luther-Universität Halle-Wittenberg

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ImageJ/Fiji Workshop

Übersicht

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Organizers

  • Dr. Martin Schattet
    Institutsbereich Pflanzenphysiologie / Martin-Luther-Universität Halle-Wittenberg
  • Dr. Birgit Möller
    Institut für Informatik / Martin-Luther-Universität Halle-Wittenberg
  • Dr. Markus Glaß
    Institut für Molekulare Medizin, Core  Facility Imaging der Medizinischen Fakultät / Martin-Luther-Universität  Halle-Wittenberg
  • Dr. Danny Misiak
    Institut für Molekulare Medizin, Core  Facility Imaging der Medizinischen Fakultät / Martin-Luther-Universität  Halle-Wittenberg

Venue

The ImageJ/Fiji workshop 2023 will be hosted at the Leibniz Institute of Plant Biochemistry in Halle.

Dates

  • Thursday, 23rd of February
  • Friday, 24th of February

On Friday after the official end of the workshop there will be some time for your specific questions and problems. You can bring images from your research and we will be happy to give suggestions and advice on how to best analyze the images and extract the data you desire.

Contents

The course will cover a large variety of topics, e.g.:

  • basic facts about the nature of digital images
  • transforming raw data files to figures
  • placing scale bars and extracting histograms
  • basics of different file formats
  • segmenting and measuring objects
  • particle analysis
  • handling ImageJ plugins
  • basics of automating tasks

Language

The course will be held in English.

What to bring?

The course will have hands on parts for which you need to bring your own laptop. It is also of advantage to bring a mouse since ImageJ/Fiji strongly relies on graphical interaction. Your laptop should have Fiji running and our sample files on its hard drive. The latest release of Fiji can be found on its webpage http://fiji.sc/Downloads#Fiji.    If you encounter any problems during installation we will be happy to provide support, just write us an email.

How to obtain ImageJ and sample files?

We will use an up-to-date Fiji version during all course days. Please make sure that you have Fiji running on your laptop. You can download the latest version of Fiji from its webpage http://fiji.sc/Downloads#Fiji.   

In addition, we will use different sample data sets. Please download the sample data and some documents from the cloud link provided in the email sent to you.

Further Information about ImageJ

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