Martin Luther University Halle-Wittenberg

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Software und Tools

rhizoTrak Tool    

rhizoTrak

rhizoTrak is a software tool for handy manual annotation of root images. It is particularly well-suited for the annotation of time-series images as for example acquired with minirhizotrons.

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PaCeQuant - High-Troughput Quantification of Cell Shape

PaCeQuant

A Tool for High-Throughput Quantification of Pavement Cell Shape Characteristics

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CytoskeletonAnalyzer2D

CytoskeletonAnalyzer2D

This tool allows to quantify similarities and differences in structural organization of the cytoskeleton within cells, e.g., with regard to actin or microtubuli structures.

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MiToBo Cell Counter

MiToBo Cell Counter

An ImageJ/Fiji plugin for semi-automatic labeling and counting of spot-like structures and small cells in images. The plugin is based on the popular ImageJ CellCounter    plugin by Kurt De Vos and extends its functionality towards improved usability and integration of automatic segmentation algorithms.

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MiToBo - A microscope image analysis toolbox

MiToBo

A microscope image analysis toolbox

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Alida - Advanced Library for Integrated Development of Data Analysis Applications

Alida

Advanced Library for Integrated Development of Data Analysis Applications

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