|
||||||||
PREV CLASS NEXT CLASS | FRAMES NO FRAMES | |||||||
SUMMARY: NESTED | FIELD | CONSTR | METHOD | DETAIL: FIELD | CONSTR | METHOD |
java.lang.Objectde.unihalle.informatik.Alida.operator.ALDOperator
de.unihalle.informatik.MiToBo.core.operator.MTBOperator
de.unihalle.informatik.MiToBo.apps.neurites2D.NeuriteParticleDetector2D
@ALDAOperator(genericExecutionMode=ALL, level=APPLICATION, allowBatchMode=true) public class NeuriteParticleDetector2D
This operator detects particles of a neuron image, for example from FISH analysis. Particles in the complete image or inside the neurite regions of a given neurite set can be detected.
ParticleDetectorUWT2D
Nested Class Summary |
---|
Nested classes/interfaces inherited from class de.unihalle.informatik.Alida.operator.ALDOperator |
---|
de.unihalle.informatik.Alida.operator.ALDOperator.HidingMode |
Field Summary | |
---|---|
private MTBRegion2DSet |
detectedParticles
|
private MTBNeurite2DSet |
neuriteSet
Set of neurite regions for detecting particle only inside these regions, an be null for detection all particles in the complete image |
private java.lang.Integer |
particleChannel
Define extractor parameters. |
private ParticleDetectorUWT2D |
particleDetector
|
Fields inherited from class de.unihalle.informatik.Alida.operator.ALDOperator |
---|
completeDAG, name, portHashAccess, verbose, versionProvider |
Constructor Summary | |
---|---|
NeuriteParticleDetector2D()
Standardconstructor. |
|
NeuriteParticleDetector2D(java.lang.Integer _particleChannel,
ParticleDetectorUWT2D _particleDetector,
MTBNeurite2DSet _neuriteSet,
java.lang.Boolean _verbose)
Constructor. |
Method Summary | |
---|---|
MTBRegion2DSet |
getDetectedParticles()
Get regions of detected particles. |
MTBNeurite2DSet |
getNeuriteSet()
Get the input set of neurites. |
java.lang.Integer |
getParticleChannel()
Get image channel including particles. |
ParticleDetectorUWT2D |
getParticleDetector()
Get particle detector. |
protected void |
operate()
|
void |
setNeuriteSet(MTBNeurite2DSet _neuriteSet)
Set the input set of neurites. |
void |
setParticleImage(MTBImage particleImage)
Set particle image for particle detector. |
Methods inherited from class de.unihalle.informatik.MiToBo.core.operator.MTBOperator |
---|
readResolve |
Methods inherited from class de.unihalle.informatik.Alida.operator.ALDOperator |
---|
deserializeFromXmlFile, fieldContained, getALDPortHashAccessKey, getConstructionMode, getInInoutNames, getInInoutNames, getInNames, getInOutNames, getMissingRequiredInputs, getName, getNumParameters, getOutInoutNames, getOutNames, getParameter, getParameterDescriptor, getParameterNames, getSupplementalNames, getVerbose, getVersion, isConfigured, parametersToXmlObject, print, print, print, printInterface, printInterface, readHistory, reinitializeParameterDescriptors, runOp, runOp, runOp, serializeToXmlFile, setConstructionMode, setName, setParameter, setParametersFromXml, setParametersFromXml, setVerbose, toStringVerbose, unconfiguredItems, validate, validateCustom, validateGeneric, writeHistory, writeHistory, writeHistory, writeParametersToXml |
Methods inherited from class java.lang.Object |
---|
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait |
Field Detail |
---|
@Parameter(label="Detected Particle Regions", direction=OUT, required=true, description="Regions of detected particles.") private transient MTBRegion2DSet detectedParticles
private transient MTBNeurite2DSet neuriteSet
@Parameter(label="Particle Channel", direction=IN, required=true, description="Image channel including particles (1 labels first channel).", mode=STANDARD, dataIOOrder=0) private java.lang.Integer particleChannel
@Parameter(label="Particle Detector", required=true, direction=IN, description="Particle detector.", mode=STANDARD, dataIOOrder=1) private ParticleDetectorUWT2D particleDetector
Constructor Detail |
---|
public NeuriteParticleDetector2D() throws de.unihalle.informatik.Alida.exceptions.ALDOperatorException
de.unihalle.informatik.Alida.exceptions.ALDOperatorException
public NeuriteParticleDetector2D(java.lang.Integer _particleChannel, ParticleDetectorUWT2D _particleDetector, MTBNeurite2DSet _neuriteSet, java.lang.Boolean _verbose) throws de.unihalle.informatik.Alida.exceptions.ALDOperatorException
_particleChannel
- channel number of particles in the multi-fluorescence image (1
labels first channel)_particleDetector
- detector for particle detection_neuriteSet
- set of neurite regions for detecting particle only inside these
regions, can be null for detection all particles in the complete
image_verbose
- flag for standard console outputs
de.unihalle.informatik.Alida.exceptions.ALDOperatorException
Method Detail |
---|
public MTBRegion2DSet getDetectedParticles()
public MTBNeurite2DSet getNeuriteSet()
public java.lang.Integer getParticleChannel()
public ParticleDetectorUWT2D getParticleDetector()
protected void operate() throws de.unihalle.informatik.Alida.exceptions.ALDOperatorException, de.unihalle.informatik.Alida.exceptions.ALDProcessingDAGException
operate
in class de.unihalle.informatik.Alida.operator.ALDOperator
de.unihalle.informatik.Alida.exceptions.ALDOperatorException
de.unihalle.informatik.Alida.exceptions.ALDProcessingDAGException
public void setNeuriteSet(MTBNeurite2DSet _neuriteSet)
public void setParticleImage(MTBImage particleImage)
|
||||||||
PREV CLASS NEXT CLASS | FRAMES NO FRAMES | |||||||
SUMMARY: NESTED | FIELD | CONSTR | METHOD | DETAIL: FIELD | CONSTR | METHOD |