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java.lang.Objectde.unihalle.informatik.Alida.operator.ALDOperator
de.unihalle.informatik.MiToBo.core.operator.MTBOperator
de.unihalle.informatik.MiToBo.apps.nuclei2D.NucleusSeparator2D
@ALDAOperator(genericExecutionMode=ALL, level=APPLICATION) public class NucleusSeparator2D
Class provides routines for separating conglomerates of cell nuclei in 2D.
Nested Class Summary | |
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static class |
NucleusSeparator2D.ResultImageMode
Display mode of the result image. |
Nested classes/interfaces inherited from class de.unihalle.informatik.Alida.operator.ALDOperator |
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de.unihalle.informatik.Alida.operator.ALDOperator.HidingMode |
Field Summary | |
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private MTBImage |
inputImg
Input image to be processed. |
private MTBImage |
labelImg
Binary nuclei image to be processed. |
private NucleusSeparator2DAlgos |
nucSepOp
Operation mode of the operator. |
private NucleusSeparator2D.ResultImageMode |
resultDisplayMode
Mode of how to display result image. |
private MTBImageShort |
resultImg
Result label image of separated nuclei. |
Fields inherited from class de.unihalle.informatik.Alida.operator.ALDOperator |
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completeDAG, name, portHashAccess, verbose, versionProvider |
Constructor Summary | |
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NucleusSeparator2D()
Empty constructor. |
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NucleusSeparator2D(MTBImage label,
NucleusSeparator2DAlgos op)
Default constructor. |
Method Summary | |
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MTBImageShort |
getResultImage()
Returns result image, i.e. the segmentation mask. |
protected void |
operate()
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private void |
prepareResultImage(MTBImageShort labelImage)
Prepare visualization of result. |
void |
setInputGrayScaleImage(MTBImage img)
Specify input gray-scale image. |
void |
setInputLabelImage(MTBImage img)
Specify label input image. |
Methods inherited from class de.unihalle.informatik.MiToBo.core.operator.MTBOperator |
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readResolve |
Methods inherited from class de.unihalle.informatik.Alida.operator.ALDOperator |
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deserializeFromXmlFile, fieldContained, getALDPortHashAccessKey, getConstructionMode, getInInoutNames, getInInoutNames, getInNames, getInOutNames, getMissingRequiredInputs, getName, getNumParameters, getOutInoutNames, getOutNames, getParameter, getParameterDescriptor, getParameterNames, getSupplementalNames, getVerbose, getVersion, isConfigured, parametersToXmlObject, print, print, print, printInterface, printInterface, readHistory, reinitializeParameterDescriptors, runOp, runOp, runOp, serializeToXmlFile, setConstructionMode, setName, setParameter, setParametersFromXml, setParametersFromXml, setVerbose, toStringVerbose, unconfiguredItems, validate, validateCustom, validateGeneric, writeHistory, writeHistory, writeHistory, writeParametersToXml |
Methods inherited from class java.lang.Object |
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clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait |
Field Detail |
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@Parameter(label="Greyscale Input Image", required=true, direction=IN, dataIOOrder=-21, mode=STANDARD, description="Greyscale input image to be analyzed.") private transient MTBImage inputImg
@Parameter(label="Label Input image", required=true, mode=STANDARD, dataIOOrder=-20, direction=IN, description="Label input image.") private transient MTBImage labelImg
@Parameter(label="Operator Mode", required=true, mode=STANDARD, direction=IN, description="Operator separation mode.") private NucleusSeparator2DAlgos nucSepOp
@Parameter(label="Result image display mode", required=false, mode=STANDARD, direction=IN, supplemental=true, description="Mode how result image is displayed.") private NucleusSeparator2D.ResultImageMode resultDisplayMode
@Parameter(label="Result image", direction=OUT, description="Label image of separated nuclei.") private transient MTBImageShort resultImg
Constructor Detail |
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public NucleusSeparator2D() throws de.unihalle.informatik.Alida.exceptions.ALDOperatorException
de.unihalle.informatik.Alida.exceptions.ALDOperatorException
public NucleusSeparator2D(MTBImage label, NucleusSeparator2DAlgos op) throws de.unihalle.informatik.Alida.exceptions.ALDOperatorException
label
- Label image to be processed.mode
- Operator mode to be applied.
de.unihalle.informatik.Alida.exceptions.ALDOperatorException
Method Detail |
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public MTBImageShort getResultImage()
protected void operate() throws de.unihalle.informatik.Alida.exceptions.ALDOperatorException, de.unihalle.informatik.Alida.exceptions.ALDProcessingDAGException
operate
in class de.unihalle.informatik.Alida.operator.ALDOperator
de.unihalle.informatik.Alida.exceptions.ALDOperatorException
de.unihalle.informatik.Alida.exceptions.ALDProcessingDAGException
private void prepareResultImage(MTBImageShort labelImage)
public void setInputGrayScaleImage(MTBImage img)
public void setInputLabelImage(MTBImage img)
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