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java.lang.Objectde.unihalle.informatik.Alida.operator.ALDOperator
de.unihalle.informatik.MiToBo.core.operator.MTBOperator
de.unihalle.informatik.MiToBo.filters.linear.LinearFilter
@ALDAOperator(genericExecutionMode=ALL) public class LinearFilter
Generic linear filter operation class
Nested Class Summary |
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Nested classes/interfaces inherited from class de.unihalle.informatik.Alida.operator.ALDOperator |
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de.unihalle.informatik.Alida.operator.ALDOperator.HidingMode |
Field Summary | |
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private MTBImageWindow.BoundaryPadding |
boundaryPadding
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private MTBImage |
inputImg
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private MTBImage |
kernelImg
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private boolean |
kernelNormalization
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private int[] |
kernelOrigin
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private java.util.Vector<loci.common.StatusListener> |
m_statusListeners
vector of installed StatusListeners |
private MTBImage |
resultImg
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Fields inherited from class de.unihalle.informatik.Alida.operator.ALDOperator |
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completeDAG, name, portHashAccess, verbose, versionProvider |
Constructor Summary | |
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LinearFilter()
Empty constructor |
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LinearFilter(MTBImage inImg,
MTBImage kernelImg)
Constructor |
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LinearFilter(MTBImage inImg,
MTBImage kernelImg,
int[] kernelOrigin,
boolean kernelNormalization,
MTBImageWindow.BoundaryPadding boundaryPadding)
Constructor |
Method Summary | |
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void |
addStatusListener(loci.common.StatusListener statuslistener)
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protected MTBImage |
convolve(MTBImage img,
MTBImage kernel,
int[] kernelAnchor,
boolean normalize,
MTBImageWindow.BoundaryPadding boundaryPadding)
Convolve an image with a specified kernel. |
MTBImageWindow.BoundaryPadding |
getBoundaryPadding()
Get value of Parameter argument boundaryPadding. |
MTBImage |
getInputImg()
Get input image. |
MTBImage |
getKernelImg()
Get convolution kernel (image). |
boolean |
getKernelNormalization()
Get value of Parameter argument kernelNormalization. |
int[] |
getKernelOrigin()
Get value of Parameter argument kernelOrigin. |
MTBImage |
getResultImg()
Get resulting image. |
void |
notifyListeners(loci.common.StatusEvent e)
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protected void |
operate()
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void |
removeStatusListener(loci.common.StatusListener statuslistener)
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void |
setBoundaryPadding(MTBImageWindow.BoundaryPadding boundaryPadding)
Set value of Parameter argument boundaryPadding. |
void |
setInputImg(MTBImage img)
Set input image. |
void |
setKernelImg(MTBImage kernelImg)
Set convolution kernel (image). |
void |
setKernelNormalization(boolean kernelNormalization)
Set value of Parameter argument kernelNormalization. |
void |
setKernelOrigin(int[] kernelOrigin)
Set value of Parameter argument kernelOrigin. |
protected void |
setResultImg(MTBImage resultImg)
Set resulting image. |
void |
validateCustom()
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Methods inherited from class de.unihalle.informatik.MiToBo.core.operator.MTBOperator |
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readResolve |
Methods inherited from class de.unihalle.informatik.Alida.operator.ALDOperator |
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deserializeFromXmlFile, fieldContained, getALDPortHashAccessKey, getConstructionMode, getInInoutNames, getInInoutNames, getInNames, getInOutNames, getMissingRequiredInputs, getName, getNumParameters, getOutInoutNames, getOutNames, getParameter, getParameterDescriptor, getParameterNames, getSupplementalNames, getVerbose, getVersion, isConfigured, parametersToXmlObject, print, print, print, printInterface, printInterface, readHistory, reinitializeParameterDescriptors, runOp, runOp, runOp, serializeToXmlFile, setConstructionMode, setName, setParameter, setParametersFromXml, setParametersFromXml, setVerbose, toStringVerbose, unconfiguredItems, validate, validateGeneric, writeHistory, writeHistory, writeHistory, writeParametersToXml |
Methods inherited from class java.lang.Object |
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clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait |
Field Detail |
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@Parameter(label="Boundary padding", required=true, direction=IN, mode=ADVANCED, dataIOOrder=5, description="Image is padded by the specified method (Default: 0s are assumed outside the image)") private MTBImageWindow.BoundaryPadding boundaryPadding
@Parameter(label="Input image", required=true, direction=IN, mode=STANDARD, dataIOOrder=1, description="Input image") private MTBImage inputImg
@Parameter(label="Kernel image", required=true, direction=IN, mode=STANDARD, dataIOOrder=2, description="Convolution kernel (image)") private MTBImage kernelImg
@Parameter(label="Kernel normalization", required=true, direction=IN, mode=ADVANCED, dataIOOrder=4, description="If true, kernel values are normalized to sum to 1 (Default)") private boolean kernelNormalization
@Parameter(label="Kernel origin", required=false, direction=IN, mode=ADVANCED, dataIOOrder=3, description="Coordinate of the kernel\'s origin in the kernel image. If not specified (null) it defaults to the center of the kernel image rounded down.") private int[] kernelOrigin
private java.util.Vector<loci.common.StatusListener> m_statusListeners
@Parameter(label="Result image", required=true, direction=OUT, mode=STANDARD, dataIOOrder=1, description="Result image") private MTBImage resultImg
Constructor Detail |
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public LinearFilter() throws de.unihalle.informatik.Alida.exceptions.ALDOperatorException
de.unihalle.informatik.Alida.exceptions.ALDOperatorException
public LinearFilter(MTBImage inImg, MTBImage kernelImg) throws java.lang.IllegalArgumentException, de.unihalle.informatik.Alida.exceptions.ALDOperatorException
java.lang.IllegalArgumentException
de.unihalle.informatik.Alida.exceptions.ALDOperatorException
public LinearFilter(MTBImage inImg, MTBImage kernelImg, int[] kernelOrigin, boolean kernelNormalization, MTBImageWindow.BoundaryPadding boundaryPadding) throws java.lang.IllegalArgumentException, de.unihalle.informatik.Alida.exceptions.ALDOperatorException
java.lang.IllegalArgumentException
de.unihalle.informatik.Alida.exceptions.ALDOperatorException
Method Detail |
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public void addStatusListener(loci.common.StatusListener statuslistener)
addStatusListener
in interface loci.common.StatusReporter
protected MTBImage convolve(MTBImage img, MTBImage kernel, int[] kernelAnchor, boolean normalize, MTBImageWindow.BoundaryPadding boundaryPadding)
img
- input imagekernel
- kernel imagekernelAnchor
- array of length 5 to specify the kernel element, under which the result value is stored ([0]=x-position, [1]=y-pos, [2]=z-pos, [3]=t-pos, [4]=c-pos)normalize
- flag for kernel normalization (kernel weights sum to 1)boundaryPadding
- set the padding method outside the boundaries of the underlying image (see static final fields)public MTBImageWindow.BoundaryPadding getBoundaryPadding()
public MTBImage getInputImg()
public MTBImage getKernelImg()
public boolean getKernelNormalization()
public int[] getKernelOrigin()
public MTBImage getResultImg()
public void notifyListeners(loci.common.StatusEvent e)
notifyListeners
in interface loci.common.StatusReporter
protected void operate() throws de.unihalle.informatik.Alida.exceptions.ALDOperatorException
operate
in class de.unihalle.informatik.Alida.operator.ALDOperator
de.unihalle.informatik.Alida.exceptions.ALDOperatorException
public void removeStatusListener(loci.common.StatusListener statuslistener)
removeStatusListener
in interface loci.common.StatusReporter
public void setBoundaryPadding(MTBImageWindow.BoundaryPadding boundaryPadding)
value
- of boundaryPaddingpublic void setInputImg(MTBImage img)
public void setKernelImg(MTBImage kernelImg)
public void setKernelNormalization(boolean kernelNormalization)
value
- of kernelNormalizationpublic void setKernelOrigin(int[] kernelOrigin)
int
- array with five elements specifying the image coordinate [x,y,z,t,c] considered as the origin (0,0,0,0,0) of the kernelprotected void setResultImg(MTBImage resultImg)
public void validateCustom() throws de.unihalle.informatik.Alida.exceptions.ALDOperatorException
validateCustom
in class de.unihalle.informatik.Alida.operator.ALDOperator
de.unihalle.informatik.Alida.exceptions.ALDOperatorException
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