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@INPROCEEDINGS{Posch14_OGRW,   
TITLE = {{D}esign and {I}mplementation of the {A}lida {F}ramework to {E}ase the {D}evelopment of {I}mage {A}nalysis {A}lgorithms},   
AUTHOR = {Stefan Posch and Birgit M{\"o}ller},   
BOOKTITLE = {9th Open German-Russian Workshop on Pattern Recognition and Image Understanding ({OGRW} 2014), Proceedings},   
YEAR = {2015},    
ADRESS = {Koblenz},   
EDITOR = {Dietrich Paulus and Christian Fuchs and Detlev Droege},   
MONTH = {5},   
NOTE = {Workshop Chairs: Heinrich Niemann, Yuri Zhuravlev},   
PAGES = {75-81},   
PUBLISHER = {University of Koblenz-Landau},  
FILE = {:http\://kola.opus.hbz-nrw.de/volltexte/2015/1136/pdf/OGRW_2014_Proceedings.pdf:URL},   
SHORTTITLE = {{OGRW}},   
URL = {http://kola.opus.hbz-nrw.de/volltexte/2015/1136/pdf/OGRW_2014_Proceedings.pdf#82},   
URN = {urn:nbn:de:hbz:kob7-2015051206} }

@ARTICLE{Franke15_JECR,   
TITLE = {The 'MTB Cell Counter' a versatile tool for the semi-automated quantification of sub-cellular phenotypes in fluorescence microscopy images. A case study on plastids, nuclei and peroxisomes},   
AUTHOR = {Lars Franke and Benjamin Storbeck and Jessica Lee Erickson and Daniela R{\"o}del and Daniel Schr{\"o}ter and Birgit M{\"o}ller and Martin Hartmut Schattat},   
JOURNAL = {Journal of Endocytobiosis and Cell Research},   
YEAR = {2015},   
PAGES = {31-42},   
VOLUME = {26},   
KEYWORDS = {plastid, nucleus, peroxisome, image analysis, ImageJ, MiToBo, stromule, cell biology},   
URL = {http://zs.thulb.uni-jena.de/receive/jportal_jparticle_00342296   } }

@ARTICLE{Bley14_NAR,
AUTHOR = {N. Bley and M. Lederer and B. Pfalz and C. Reinke and T. Fuchs and M. Gla{\ss} and B. M{\"o}ller and S. H{\"u}ttelmaier},
TITLE = {Stress granules are dispensable for {mRNA} stabilization during cellular stress},
JOURNAL = {Nucleic Acids Research},
YEAR = {2014},
VOLUME = {43},
NUMBER = {4},
PAGES = {e26},
MONTH = {December},
DOI = {10.1093/nar/gku1275},
NOTE = {PubMed PMID: 25488811},
TIMESTAMP = {2014.02.04},
URL = {http://nar.oxfordjournals.org/content/43/4/e26.long   } }

@INPROCEEDINGS{Moeller14_ICPR,   
AUTHOR = {B. M{\"o}ller and E. Piltz and N. Bley},
TITLE = {Quantification of Actin Structures using Unsupervised Pattern Analysis Techniques},
BOOKTITLE = {Proceedings of Int.~Conf.~on Pattern Recognition (ICPR)},   
YEAR = {2014},   
PAGES = {3251-3256},   
ADDRESS = {Stockholm, Sweden},
MONTH = {August},
PUBLISHER = {IEEE} }

@ARTICLE{Misiak14_JNM,   author = {Danny Misiak and Stefan Posch and Marcell Lederer and Claudia Reinke and Stefan H{\"u}ttelmaier and Birgit M{\"o}ller},
TITLE= {Extraction of protein profiles from primary neurons using active contour models and wavelets},
JOURNAL= {Journal of Neuroscience Methods},
YEAR= {2014},
VOLUME= {225},
PAGES= {1-12},
MONTH= {March},
DOI= {http://dx.doi.org/10.1016/j.jneumeth.2013.12.009   },
KEYWORDS= {Active contours; Fluorescence microscopy; High-content analysis; Neuron morphology; Protein distribution; Segmentation; Wavelets},
URL= {http://www.sciencedirect.com/science/article/pii/S0165027013004330   } }

@ARTICLE{grau13talenoffer,
AUTHOR= {Jan Grau, Jens Boch and Stefan Posch},
JOURNAL= {Bioinformatics},
TITLE= {TALENoffer: genome-wide TALEN off-target prediction},
YEAR= {2013}}

@ARTICLE{grau13a-general,
AUTHOR= {Jan Grau, Stefan Posch, Ivo Grosse and Jens Keilwagen},
JOURNAL= {Nucleic Acids Research},
TITLE= {A general approach for discriminative de-novo motif discovery from high-throughput data},
YEAR= {2013, doi: 10.1093/nar/gkt831}}

@ARTICLE{grau13computational,
AUTHOR= {Jan Grau, Annett Wolf, Maik Reschke, Ulla Bonas, Stefan Posch and Jens Boch},
JOURNAL= {PLoS Comput Biol},
MONTH= {03},
NUMBER= {3},
PAGES = {e1002962},
TITLE= {Computational Predictions Provide Insights into the Biology of TAL Effector Target Sites},
VOLUME= {9},
YEAR= {2013}}

@ARTICLE{grau13dispom,
AUTHOR = {Jan Grau, Jens Keilwagen, Andr{\'e} Gohr, Ivan A. Paponov, Stefan Posch, Michael Seifert, Marc Strickert and Ivo Grosse},
JOURNAL= {Journal of Bioinformatics and Computational Biology},
NUMBER= {1},
TITLE= {Dispom: A Discriminative De-novo Motif Discovery Tool Based On The Jstacs Library},
VOLUME= {11},
YEAR= {2013}}

@INPROCEEDINGS{Elibol13_IbPRIA,
AUTHOR = {Armagan Elibol, Stefan Posch, Andreas Maurer, Klaus Pillen and Birgit Möller},
TITLE = {Vision-Based 3D-Reconstruction of Barley Plants},
BOOKTITLE = {Proc. of 6th Iberian Conference on Pattern Recognition and Image Analysis},
YEAR = {2013},
PAGES = {406-415},
EE = {http://dx.doi.org/10.1007/978-3-642-38628-2_48   },
CROSSREF = {DBLP:conf/ibpria/2013},
BIBSOURCE = {DBLP, http://dblp.uni-trier.de   }}

@INPROCEEDINGS{Moeller13_MVA,
AUTHOR = {Birgit M{\"o}ller and Stefan Posch},
TITLE = {A Framework Unifying the Development of Image Analysis Algorithms and Associated User Interfaces},
BOOKTITLE = {Proc. of 13th IAPR International Conference on Machine Vision Applications (MVA)},
YEAR = {2013},
PAGES = {447-450},
ADDRESS = {Kyoto, Japan},
MONTH = {May},
TIMESTAMP = {2013.02.26}}

@INPROCEEDINGS{Moeller12_ImageJEditor,
AUTHOR = {S. Kirchner, S. Posch and B. Möller},
TITLE = {Graphical Programming in Alida and ImageJ 2.0},
MONTH = {October},
BOOKTITLE = {Proc. of ImageJ User \& Developer Conference},
YEAR = {2012},
PAGES = {138-143},
COMMENT = {ISBN 2-919941-18-6},
ADDRESS = {Mondorf-les-Bains, Luxembourg}}

@INPROCEEDINGS{Moeller12_ImageJSnakes,
AUTHOR = {B. Möller and D. Misiak},
TITLE = {SnakeOptimizer - Object Segmentation with Parametric Active Contours
in ImageJ},
BOOKTITLE= {Proc. of ImageJ User \& Developer Conference},
YEAR = {2012},
ADDRESS= {Mondorf-les-Bains, Luxembourg},
MONTH = {October},
PAGES = {215-217, 222},
COMMENT = {ISBN 2-919941-18-6},
KEYWORDS = {Image Segmentation, Active Contours, Snakes, ImageJ, Alida}}

@INPROCEEDINGS{Glass12_ImageJ,
AUTHOR = {M. Glaß, B. Möller and S. Posch},
TITLE = {Scratch Assay Analysis in ImageJ},
BOOKTITLE = {Proc. of ImageJ User \& Developer Conference},
YEAR = {2012},
ADDRESS = {Mondorf-les-Bains, Luxembourg},
MONTH = {October},
PAGES = {211-214},
COMMENT = {ISBN 2-919941-18-6},
KEYWORDS = {Scratch assay, Level sets, SVM, Entropy, Topology preservation}}

@INPROCEEDINGS{Posch12_ImageJ,
AUTHOR = {S. Posch and B. Möller},
TITLE = {Automatic Generation of Processing Histories using Alida},
BOOKTITLE = {Proc. of ImageJ User \& Developer Conference},
YEAR = {2012},
ADDRESS = {Mondorf-les-Bains, Luxembourg},
MONTH = {October},
PAGES = {218-221},
COMMENT = {ISBN 2-919941-18-6},
NOTE = {Best Scientific Poster Award, 1st place},
KEYWORDS = {Process Documentation, Processing Graph, XML, Alida, ImageJ}}

@ARTICLE{Glass12_PR,
AUTHOR= {Markus Glaß, Birgit Möller, A. Zirkel, K. Wächter, Stefan Hüttelmaier and Stefan Posch},
TITLE = {Cell Migration Analysis: Segmenting Scratch Assay Images with Level    Sets and Support Vector Machines},
JOURNAL= {Pattern Recognition},
YEAR = {2012},
VOLUME = {45},
PAGES = {3154-3165},
NUMBER= {9},
MONTH = {September},
ABSTRACT = {Cell migration assessment is often done by scratch assay experiments for which quantitative evaluations are usually performed manually. Here we present an automatic analysis pipeline detecting scratch boundaries and measuring areas based on level sets. We extend non-PDE level sets for topology-preservation and use an entropy-based energy functional. This approach by design segments a scratch in every image, hence, we employ support vector machines to identify images showing no scratch at all. Compared to other algorithms our approach, implemented as ImageJ plugin, relies on a minimal set of parameters. Experimental evaluations show the high quality of results and their suitability for biomedical investigations.},
DOI = {10.1016/j.patcog.2012.03.001},
KEYWORDS = {Scratch assay, Segmentation, Level sets, Texture, Topology, SVM},
URL = {http://www.sciencedirect.com/science/article/pii/S0031320312001173   }}

@ARTICLE{grau12jstacs,
AUTHOR= {Jan Grau, Jens Keilwagen, Andr\'{e} Gohr, Berit Haldemann, Stefan Posch and Ivo Grosse},
JOURNAL= {Journal of Machine Learning Research},
NUMBER= {Jun},
PAGES= {1967-1971},
TITLE= {Jstacs: A Java Framework for Statistical Analysis and Classification of Biological Sequences},
VOLUME= {13},
YEAR= {2012}}

@INPROCEEDINGS{moeller12_isbi,
AUTHOR = {
Birgit Möller and Stefan Posch},
TITLE = {
Comparing Active Contours for the Segmentation of Biomedical Images},
BOOKTITLE = {Proc. of IEEE International Symposium on Biomedical Imaging:
From Nano to Macro(ISBI), IEEE Catalog No.: CFP12BIS-CDR    ISBN: 978-1-4577-1856-4},
YEAR = {2012},
ADDRESS = {Barcelona, Spain},
MONTH = {May}},

PAGES= {736-739}
}

@INPROCEEDINGS{posch12_isbi,
AUTHOR = {
Stefan Posch and Birgit Möller},
TITLE = {Alida - Automatic Generation of User Interfaces for Data Analysis Algorithms},
BOOKTITLE = {Proc. of IEEE International Symposium on Biomedical Imaging (ISBI), Bioimage Analysis Workshop},
YEAR = {2012},
ADDRESS = {Barcelona, Spain},
MONTH = {May}}

@ARTICLE{thum12mass,
AUTHOR = {
Steffen Neumann, Andrea Thum and Cristoph Böttcher},
JOURNAL= {
Metabolomics},
TITLE = {Nearline acquisition and processing of liquid chromatography-tandem mass spectrometry data}, YEAR= {2012},
ISSN= {
1573-3882},
PAGES= {1-8},
URL= {
http://dx.doi.org/10.1007/s11306-012-0401-0   },
AFFILIATION= {
Department of Stress and Developmental Biology, Leibniz Institute of Plant Biochemistry, Weinberg 3, 06120 Halle, Germany},
NOTE= {
10.1007/s11306-012-0401-0},
PUBLISHER= {
Springer Boston}}

@INPROCEEDINGS{gress2012parametric,
AUTHOR = {Oliver Gre{\ss} and Stefan Posch},
TITLE = {Parametric Data Association Prior for Multi-Target Tracking based on Rao-Blackwellized Monte Carlo Data Association},
BOOKTITLE = {VISAPP 2012 - International Conference on Computer Vision Theory and Applications},
YEAR= {2012},
VOLUME= {2},
PAGES= {387-394},
MONTH= {February},
ADRESS= {Rome, Italy},
EDITOR= {Gabriela Csurka and José Braz},
PUBLISHER= {SciTePress} }

@INBOOK{Moeller11_VISIGRAPP,
CHAPTER = {Adaptive Segmentation of Particles and Cells for Fluorescent Microscope Imaging},
PAGES = {154-169},
TITLE = {VISIGRAPP 2010, Revised Selected Papers of Int. Joint Conf. on Computer Vision, Imaging and Computer Graphics. Theory and Applications},
PUBLISHER = {Springer},
YEAR = {2011},
EDITOR = {P. Richard and J. Braz},
AUTHOR = {B. Möller, O. Greß, N. Stöhr, S. Hüttelmaier, S. Posch},
VOLUME = {229},
SERIES = {Communications in Computer and Information Science},
URL = {http://www.springer.com/computer/image+processing/book/978-3-642-25381-2   } }

@INPROCEEDINGS{moeller11:miaab,   
AUTHOR = {Birgit M{\"o}ller and Stefan Posch},   
TITLE = {{MiCA} - Easy Cell Image Analysis with Normalized Snakes},   
BOOKTITLE = {International Workshop on Microscopic Image Analysis with Applications in Biology},   
YEAR = {2011},   
MONTH = {September},   
DAY = {2},   
CITY = {Heidelberg} }

@ARTICLE{springerlink:10.1007/s11033-011-0796-0,   
AUTHOR = {Hesse, Manuela and Willscher, Edith and Schmiedel, Benjamin and Posch, Stefan and Golbik, Ralph and Staege, Martin},   
AFFILIATION = {Department of Pediatrics, Childrenâ<80><99>s Cancer Research Centre, Martin-Luther-University Halle-Wittenberg, Ernst Grube Str. 40, 06097 Halle, Germany},   
TITLE = {Sequence and expression of the chicken membrane-associated phospholipases A1 alpha (LIPH) and beta (LIPI)},   
JOURNAL = {Molecular Biology Reports},   
PUBLISHER = {Springer Netherlands},   
ISSN = {0301-4851},   
KEYWORD = {Biomedical and Life Sciences},   
PAGES = {1-9},   
URL = {http://dx.doi.org/10.1007/s11033-011-0796-0   },   
NOTE = {10.1007/s11033-011-0796-0},   YEAR = {2011} }

@INPROCEEDINGS{Moeller11_ICVS,
AUTHOR = {Birgit Möller and Oliver Greß and Stefan Posch},
TITLE = {Knowing what happened - Automatic Documentation of Image Analysis Processes},
BOOKTITLE = {Proceedings of 8th International Conference on Computer Vision Systems},
YEAR = {2011},
EDITOR = {J.L. Crowley, B.A. Draper, and M. Thonnat},
VOLUME = {6962},
SERIES = {LNCS},
PAGES = {1-10},
ADRESS = {Sophia Antipolis, France},
PUBLISHER = {Springer},
KEYWORDS = {automatic documentation, meta data, XML, processing graph, image analysis},
OWNER = {moeller},
TIMESTAMP = {2011.09.26},
URL = {http://www.   springerlink.   com/content/m331u047758nn84l/   } }

@INPROCEEDINGS{Glass11_IbPRIA,
AUTHOR = {M. Glaß and B. Möller and A. Zirkel and K. Wächter and S. Hüttelmaier and S. Posch},
TITLE = {Scratch Assay Analysis with Topology-preserving Level Sets and Texture Measures},   
BOOKTITLE = {Proc. of 5th Iberian Conference on Pattern Recognition and Image Analysis (IbPRIA '11)},
YEAR = {2011},   
EDITOR = {Jordi Vitrià and João M. Sanches and Mario Hernández},
NUMBER = {6669},
SERIES = {LNCS},   
PAGES = {100-108},
ADDRESS = {Gran Canaria, Spain},
PUBLISHER = {Springer},   
ABSTRACT = {},
KEYWORDS = {Scratch assay, level set segmentation, texture, topology},
OWNER = {moeller},
TIMESTAMP = {2011.07.01}
}

@ARTICLE{keilwagen11:dispomm,
AUTHOR = {Keilwagen, Jens AND Grau, Jan AND Paponov, Ivan A. AND Posch, Stefan AND Strickert, Marc AND Grosse, Ivo},
JOURNAL = {PLoS Comput Biol},
PUBLISHER = {Public Library of Science},
TITLE = {De-Novo Discovery of Differentially Abundant Transcription Factor Binding Sites Including Their Positional Preference},
YEAR = {2011},
MONTH = {February},
VOLUME = {7},
URL = {http://dx.doi.org/10.1371%2Fjournal.pcbi.1001070   },
PAGES = {e1001070},
}

@INPROCEEDINGS{Moeller10:icpr,
AUTHOR = {Birgit M{\"o}ller and Nadine St{\"o}hr and Stefan H{\"u}ttelmaier and Stefan Posch },
TITLE = {Cascaded Segmentation of Grained Cell Tissue with Active Contour Models},
BOOKTITLE = {Proceedings International Conference on Pattern Recognition},
YEAR = {2010},
PAGES = {1481-1484}
}

@INPROCEEDINGS{Gress10:bvm,
EDITOR = {Hans-Peter Meinzer and Thomas Martin Deserno and Heinz Handels and Thomas Tolxdorff},
ADDRESS = {Berlin},
LOCATION = {Aachen},
BOOKTITLE = {{Bildverarbeitung f{\"u}r die Medizin}},
AUTHOR = {Oliver Gre{\ss} and Birgit M{\"o}ller and Nadine St{\"o}hr and Stefan H{\"u}ttelmaier and Stefan Posch},
TITLE = {Scale-adaptive Wavelet-based Particle Detection in Microscopy Images},
YEAR = {2010},
PAGES = {266-270},
PUBLISHER = {Springer}
}

@INPROCEEDINGS{Moeller10:visapp,
AUTHOR = {Birgit M{\"o}ller and Oliver Gre{\ss} and Nadine St{\"o}hr and Stefan H{\"u}ttelmaier and Stefan Posch },
TITLE = {Adaptive Segmentation of cells and particles in fluorescent microscope images},
BOOKTITLE = {Proc. of International Conference on Computer Vision Theory and Applications (VISAPP '10)},
YEAR = {2010},
NOTE = {accepted}
}

@INCOLLECTION{bookchapter10,
TITLE = {Probabilistic Approaches to Transcription Factor Binding Site Prediction},
AUTHOR = {Stefan Posch and Jan Grau and Andr{\'e} Gohr and  Jens Keilwagen and Ivo Grosse},
BOOKTITLE = {The Computational Biology of Transcription Factor Binding},
EDITOR = {Istvan Ladunga},
PUBLISHER = {Springer Press},
SERIES = {Methods in Molecular Biology},
CITY = {Berlin},
NOTE = {in preparation},
YEAR = {2010}
}

@ARTICLE{Keilwagen2010gendisPaper,
AUTHOR = {Keilwagen, Jens and Grau, Jan and Posch, Stefan and Strickert, Marc and Grosse, Ivo},
TITLE = {Unifying generative and discriminative learning principles},
JOURNAL = {BMC Bioinformatics},
VOLUME = {11},
YEAR = {2010},
NUMBER = {1},
PAGES = {98},
URL = {http://www.biomedcentral.com/1471-2105/11/98   },
DOI = {10.1186/1471-2105-11-98},
PUBMEDID = {20175896},
ISSN = {1471-2105},
}

@ARTICLE{Keilwagen:2010:prior,
AUTHOR = {Keilwagen, Jens and Grau, Jan and Posch, Stefan and Grosse, Ivo},
TITLE = {Apples and oranges: avoiding different priors in {B}ayesian {DNA} sequence analysis},
JOURNAL = {BMC Bioinformatics},
VOLUME = {11},
YEAR = {2010},
NUMBER = {1},
PAGES = {149},
URL = {http://www.biomedcentral.com/1471-2105/11/149   },
DOI = {10.1186/1471-2105-11-149},
ISSN = {1471-2105},
}

@INPROCEEDINGS{Grau10:gcb,
ADDRESS = {Bonn},
AUTHOR = {Jan Grau and Daniel Arend and Ivo Grosse and Artemis G. Hatzigeorgiou and Jens Keilwagen and Manolis Maragkakis and Claus Weinholdt and Stefan Posch},
BOOKTITLE = {German Conference on Bioinformatics},
EDITOR = {Dietmar Schomburg and Andreas Grote},
PAGES = {81-91},
PUBLISHER = {Gesellschaft f{\"u}r Informatik},
SERIES = {Lecture Notes in Informatics (LNI) - Proceedings},
TITLE = {{Predicting miRNA targets utilizing an extended profile HMM}},
VOLUME = {P-173},
YEAR = {2010} }

@ARTICLE{moeller09:JEP,
TITLE = {Robust Features for 2-D Electrophoresis Gel Image Registration},
AUTHOR = {Birgit M{\"o}ller and Stefan Posch},
JOURNAL = {Electrophoresis},
PAGES = {4137-4148},
VOLUME = {30},
YEAR = {2009}
}

@INPROCEEDINGS{misiak09:wacv,
TITLE = {Automatic Analysis of Fluorescence Labeled Neurites in Microscope Images},
AUTHOR = {Danny Misiak and Stefan Posch and Nadine St{\"o}hr and Stefan H{\"u}ttelmaier and Birgit M{\"o}ller},
BOOKTITLE = {IEEE Workshop on Applications of Computer Vision (WACV '09)},
PAGES = {118-124},
YEAR = {2009},
CITY = {Snowbird, Utah, USA},
ISBN = {978-1-4244-5496-9},
NOTE = {IEEE Catalog Number: CFP09082-CDR}
}

@PROCEEDINGS{gcb09,
EDITOR = {Ivo Grosse and Steffen Neumann and Stefan Posch and Falk Schreiber and Peter F. Stadler},
TITLE = {German Conference on Bioinformatics 2009},
DATE = {28th to 30th September},
CITY = {Halle (Saale); Germany},
PUBLISHER = {GI},
SERIES = {LNI},
VOLUME = {157},
YEAR = {2009},
ISBN = {978-3-88579-251-2}
}

@INPROCEEDINGS{Moeller08_ICPR,
AUTHOR = {Birgit M{\"o}ller and Thomas Pl{\"o}tz and Gernot Fink},
TITLE = {Calibration-free Camera Hand-Over for Fast and Reliable Person Tracking in Multi-Camera Setups},
BOOKTITLE = {Proc. of Int. Conf. on Pattern Recognition (ICPR '08)},
YEAR = {2008},
MONTH = {December},
ADDRESS = {Tampa, Florida, USA},
NOTE = {to appear},
ABSTRACT = { }
}

@PROCEEDINGS{gcb09,
EDITOR = {Ivo Grosse and Steffen Neumann and Stefan Posch and Falk Schreiber and Peter F. Stadler},
TITLE = {German Conference on Bioinformatics 2009},
DATE = {28th to 30th September},
CITY = {Halle (Saale); Germany},
PUBLISHER = {GI},
SERIES = {LNI},
VOLUME = {157},
YEAR = {2009},
ISBN = {978-3-88579-251-2}
}

@INPROCEEDINGS{Moeller07_BMVC,
AUTHOR = {Birgit M{\"o}ller and Stefan Posch},
TITLE = {Identifying Lens Distortions in Image Registration by Learning from Examples},
BOOKTITLE = {Proc. of British Machine Vision Conference (BMVC '07)},
YEAR = {2007},
MONTH = {September},
ADDRESS = {University of Warwick, Coventry, UK},
PAGES = {I:152-161},
PDF = {http://www.dcs.warwick.ac.uk/bmvc2007/proceedings/CD-ROM/papers/paper-123.pdf   },
ABSTRACT = { }
}

@ARTICLE{Wensch07:ivc,
AUTHOR = {J{\"o}rg Wensch and Alf Gerisch and Stefan Posch},
TITLE = {Optimised coupling of hierarchies in image registration},
JOURNAL = {Image and Vision Computing},
YEAR = {2008},
VOLUME = {26},
NUMBER = {7},
PAPGES = {1000-1011},
PUBLISHER = {Elsevier},
ABSTRACT = {}
}

@ARTICLE{Moeller08:PRIA,
AUTHOR = {Birgit M{\"o}ller and Stefan Posch},
TITLE = {An Integrated Analysis Concept for Errors in Image Registration},
JOURNAL = {Int. Journal on Pattern Recognition and Image Analysis (PRIA)},
YEAR = {2008},
PUBLISHER = {Springer},
VOLUME = {18},
NUMBER = {2},
PAGES = {201-206}
}

@TECHREPORT{Moeller07_TR,
AUTHOR = {Birgit M{\"o}ller and Stefan Posch},
TITLE = {An Iconic Scene Memory Approach for Mobile Robots Interacting with Humans},
INSTITUTION = {Institute of Computer Science, Martin-Luther-University Halle-Wittenberg, Germany},
YEAR = {2007},
MONTH = {December},
TYPE = {Technical Report},
PS = {https://nirvana.informatik.uni-halle.de/~funke/TR/2007_03.pdf},
NUMBER = {2007-03}
}

@INPROCEEDINGS{Moeller07_BMVC,
AUTHOR = {Birgit M{\"o}ller and Stefan Posch},
TITLE = {Identifying Lens Distortions in Image Registration by Learning from Examples},
BOOKTITLE = {Proc. of British Machine Vision Conference (BMVC '07)},
YEAR = {2007},
MONTH = {September},
ADDRESS = {University of Warwick, Coventry, UK},
PAGES = {I:152-161},
PDF = {http://www.dcs.warwick.ac.uk/bmvc2007/proceedings/CD-ROM/papers/paper-123.pdf   },
ABSTRACT = { }
}

@INPROCEEDINGS{Moeller07_OGRW,
AUTHOR = {Birgit M{\"o}ller and Stefan Posch},
TITLE = {An Integrated Analysis Concept for Errors in Image Registration},
BOOKTITLE = {Proc. of 7th Open German/Russian Workshop on Pattern Recognition and Image Understanding (OGRW '07)},
YEAR = {2007},
MONTH = {August},
ADDRESS = {Ettlingen, Germany},
PDF = {PDF/Moeller07_OGRW.pdf},
ABSTRACT = { }
}

@INPROCEEDINGS{Moeller07_CCMVS,
AUTHOR = {Birgit M{\"o}ller and Stefan Posch},
TITLE = {Automatic Analysis of Lens Distortions in Image Registration},
BOOKTITLE = {Proc. of Int. Conf. on Computer Vision Systems (ICVS '07), Workshop on Camera Calibration Methods for
Computer Vision Systems (CCMVS '07)},
YEAR = {2007},
MONTH = {March},
ADDRESS = {Bielefeld, Germany},
PDF = {http://www.icvs2007.org/ccmvs/CCMVS2007-174.pdf   },
ABSTRACT = { }
}

@INPROCEEDINGS{Moeller07_VISAPP,
AUTHOR = {Birgit M{\"o}ller and Rafael Garcia and Stefan Posch},
TITLE = {Towards Objective Quality Assessment of Image Registration Results},
BOOKTITLE = {Proc. of International Conference on Computer Vision Theory and Applications (VISAPP '07)},
PAGES = {233-240},
YEAR = {2007},
MONTH = {March},
ADDRESS = {Barcelona, Spain},
ABSTRACT = { }
}

@INPROCEEDINGS{Opitz07_insitu,
TITLE = {Joint Analysis of In-situ Hybridization and Gene Expression Data},
AUTHOR = {Lennart Opitz and Alexander Schliep and Stefan Posch},
BOOKTITLE = {Advances in Data Analysis: Proceedings of the 30th Annual Conference of the Gesellschaft f{\"u}r Klassifikation e.V.,},
EDITOR = {Reinhold Decker and Hans -J. Lenz},
PAGES = {577-584},
YEAR = {2007},
PUBLISHER = {Springer},
CITY = {Berlin, Heidelberg},
ISBN = {978-3-540-70980-0 (Print) 978-3-540-70981-7 (Online)},
ABSTRACT = {}
}

@ARTICLE{posch07:jbcb,
AUTHOR = {Stefan Posch and Jan Grau and Andre Gohr and Irad Ben-Gal and Alexander Kel and Ivo Grosse},
TITLE = {Recognition of cis-regulatory elements with {VOMBAT}},
JOURNAL = {Journal of Bioinformatics and Computational Biology},
YEAR = {2007},
PAGES = {561-577},
VOLUME = {5},
NUMBER = {02B},
URL = {http://www.worldscinet.com/jbcb/05/0502b/S0219720007002886.html   },
ABSTRACT = {}
}

@INPROCEEDINGS{Grau07:gcb,
AUTHOR = {Jan Grau and Jens Keilwagen and Alexander Kel and Ivo Grosse  and Stefan Posch},
TITLE = {Supervised posteriors for DNA-motif classification},
BOOKTITLE = {German Conference on Bioinformtics},
YEAR = {2007},
PAGES = {123-134},
ABSTRACT = {}
}

@PROCEEDINGS{gcb09,
EDITOR = {Ivo Grosse and Steffen Neumann and Stefan Posch and Falk Schreiber and Peter F. Stadler},
TITLE = {German Conference on Bioinformatics 2009},
DATE = {28th to 30th September},
CITY = {Halle (Saale); Germany},
PUBLISHER = {GI},
SERIES = {LNI},
VOLUME = {157},
YEAR = {2009},
ISBN = {978-3-88579-251-2}
}

@INPROCEEDINGS{Moeller06_VISAPP,
AUTHOR = {Birgit M{\"o}ller and Stefan Posch},
TITLE = {A Space- and Time-Efficient Mosaic-Based Iconic Memory for Interactive Systems},
BOOKTITLE = {Proc. of International Conference on Computer Vision Theory and Applications (VISAPP '06)},
PAGES = {413--421},
YEAR = {2006},
MONTH = {February},
ADDRESS = {Set{\'u}bal, Portugal},
ABSTRACT = { }
}

@INPROCEEDINGS{Grau06:gcb-etfbs,
AUTHOR = {Jan Grau and Irad Ben-Gal and Andre Gohr and Alexander Kel and Olga Kel-Margoulis and Stefan Posch and Ivo Grosse},
TITLE = {Prediction of eukaryotic transcription factor binding sites using Variable Order Markov models},
BOOKTITLE = {GCB},
YEAR = {2006},
PAGES = {5-6}
}

@INPROCEEDINGS{Grau06:gcb-vombat,
AUTHOR = {Jan Grau and Irad Ben-Gal and Ivo Grosse and Stefan Posch},
TITLE = {VOMBAT: A web-server for predicting transcription factor binding sites using Variable Order Markov Models and Variable Order Bayesian Trees},
BOOKTITLE = {GCB, Short paper},
YEAR = {2006}
}

@INPROCEEDINGS{Poeschl06:gcb,
AUTHOR = {Yvonne P{\"o}schl and Christoph B{\"o}ttcher and Stephan Clemens and Dierk Scheel and Stefan Posch  and Steffen Neumann},
TITLE = {Analysis of Metabolite relations in LCMS data using Bayesian Networks},
BOOKTITLE = {GCB, Short paper},
YEAR = {2006},
PAGES = {17-18}
}

@ARTICLE{VOMBAT06,
AUTHOR = {Jan Grau and Irad Ben-Gal and Stefan Posch and Ivo Grosse},
TITLE = {{VOMBAT}: Prediction of Transcription Factor Binding Sites using Variable Order Bayesian Trees},
JOURNAL = {Nucleic Acids Research},
VOLUME = {34},
NUMBER = {suppl_2},
YEAR = {2006},
PAGES = {W529-533},
DOI = {10.1093/nar/gkl212},
URL = {http://nar.oxfordjournals.org/cgi/content/abstract/34/suppl_2/W529?ijkey=f29UCw2WfY47dcX&keytype=ref   }
}

@INPROCEEDINGS{Erz05:Eurocon,
AUTHOR = {Gregor Erz and Stefan Posch},
TITLE = {Root Detection By Hierarchical Seed Expansion},
BOOKTITLE = {Proceedings of Eurocon 2005},
YEAR = {2005},
MONTH = {November},
PUBLISHER = {IEEE Computer Society Press},
ADDRESS = {Belgrade},
PAGES = {963-966}
}

@INPROCEEDINGS{Moeller05_IROS,
AUTHOR = {Birgit Möller and Stefan Posch and Axel Haasch and Jannik Fritsch and Gerhard Sagerer},
TITLE = {Interactive Object Learning for Robot Companions using Mosaic Images},
BOOKTITLE = {Proc. IEEE/RSJ Int. Conf. on Intelligent Robots and Systems},
MONTH = {August},
YEAR = {2005},
ADDRESS = {Edmonton, Alberta, Canada},
PAGES = {371-376},
ABSTRACT = { }
}

@INPROCEEDINGS{Moeller05_Mirage,
AUTHOR = {Birgit M{\"o}ller and Stefan Posch},
TITLE = {A Mosaic-based Visual Memory with Applications to Active Scene Exploration},
BOOKTITLE = {Proc. of Mirage, Computer Vision / Computer Graphics Collaboration Techniques and Applications},
YEAR = {2005},
MONTH = {March},
PAGES = {117-125},
ADDRESS = {INRIA Rocquencourt, France},
PDF = {PDF/Moeller05_Mirage.pdf},
ABSTRACT = { }
}

@INPROCEEDINGS{posch05:KI,
AUTHOR = {Birgit M{\"o}ller and Stefan Posch},
TITLE = {Visual Scene Memory Based on Multi-Mosaics},
BOOKTITLE = {Mixed-reality as a challenge to image understanding and artificial intelligence},
EDITOR = {Dietrich Paulus and Detlev Droege},
ORGANIZATION = {Universit{\"a}t Koblenz-Landau, Institut f{\"u}r Informatik},
ADDRESS = {Koblenz},
YEAR = {2005},
PAGES = {27-32},
ISBN = {1860-4471},
PDF = {PDF/posch05:KI.pdf},
ABSTRACT = { }
}

@ARTICLE{Erz05,
AUTHOR = {Gregor Erz and Maik Veste  and Heiko Anlauf  and Siegmar-Walter  Breckle  and Stefan Posch},
TITLE = {A region and contour based technique for automatic detection of of tomatoe roots in minirhizotron images},
JOURNAL = {Journal of Applied Botany and Food Quality},
YEAR = {2005},
VOLUME = {79},
PAGES = {83-88}
}

@ARTICLE{Bengal05:sigma70,
AUTHOR = {I. Ben-Gal and A. Shani and A. Gohr and J. Grau and S. Arviv and A. Shmilovici and S. Posch and I. Grosse},
TITLE = {Identification of transcription factor binding sites with variable-order Bayesian networks},
JOURNAL = {Bioinformatics},
VOLUME = {21},
YEAR = {2005},
PAGES = {2657-2666},
URL = {http://bioinformatics.oxfordjournals.org/cgi/content/abstract/21/11/2657   }
}

@INPROCEEDINGS{ismb04,
AUTHOR = {Irad Ben-Gal and  Sigal Arviv and  Andre Gohr and  Jan Grau an
d  Stefan Posch and  Armin Shmilovici and Ivo Grosse},
TITLE = {Computational identification of transcription factor binding si
tes with Variable-Order Markov Models},
BOOKTITLE = {ISMB/ECCB, Poster Abstract},
YEAR = {2004}
}

@INPROCEEDINGS{gcb04,
AUTHOR = {Andreas Stephanik and  Steffen Neumann and  Lothar Altschmied
and David L. Müller and  Stefan Posch and Ivo Grosse},
TITLE = {{SMArrT}: SMArrT: An integrated Workflow for Array An integrate
d Workflow for Array Analysis},
BOOKTITLE = {GCB, Poster Abstract},
YEAR = {2004}
}

@ARTICLE{Moeller04_PRIA,
AUTHOR = {Birgit M{\"o}ller and Denis Williams and Stefan Posch},
TITLE = {Towards a Mosaic-based Visual Representation of Large Scenes},
JOURNAL = {Int. Journal on Pattern Recognition and Image Analysis (PRIA), Spec. Issue},
YEAR = {2004},
VOLUME = {14(2)},
PAGES = {262-266},
ABSTRACT = { }
}

@INPROCEEDINGS{Erz03_DAGM,
AUTHOR = {Gregor Erz and Stefan Posch},
TITLE = {A Region Based Seed Detection for Root Detection in Minirhizotron Images},
BOOKTITLE = {Pattern Recognition, Proc. of 25th DAGM Symposium},
YEAR = {2003},
MONTH = {September},
EDITOR = {B. Michaelis and G. Krell},
ADDRESS = {Magdeburg, Germany},
SERIES = {LNCS 2781},
PAGES = {482-489},
PUBLISHER = {Springer},
ABSTRACT = { }
}

@INPROCEEDINGS{Moeller03:DAGM,
AUTHOR = {Birgit M{\"o}ller and Denis Williams and Stefan Posch},
TITLE = {Robust Image Sequence Mosaicing},
BOOKTITLE = {Pattern Recognition, Proc. of 25th DAGM Symposium},
YEAR = {2003},
MONTH = {September},
EDITOR = {B. Michaelis and G. Krell},
ADDRESS = {Magdeburg, Germany},
SERIES = {LNCS 2781},
PAGES = {386-293},
PUBLISHER = {Springer},
ABSTRACT = { }
}

@INPROCEEDINGS{Moeller03:OGRW,
AUTHOR = {Birgit M{\"o}ller and Denis Williams and Stefan Posch},
TITLE = {Towards a Mosaic-based Visual Representation of Large Scenes},
BOOKTITLE = {Proc. of 6th Open German-Russian Workshop (IAPR)},
YEAR = {2003},
MONTH = {25.-30. August},
ADDRESS = {Katun Village, Altai Region, Russian Federation},
PAGES = {108-111},
ABSTRACT = { }
}

@INPROCEEDINGS{posch03:iasted,
AUTHOR = {J{\"o}rg Weitzenberg and Stefan Posch},
TITLE = {{Using Hidden-Markov-Models to analyze Concentrations from Biosensor Curves}},
BOOKTITLE = {Proc. Int. Conference Signal Processing, Pattern Recognition, \& Applications},
PUBLISHER = {IASTED},
PAGES = {98-103},
YEAR = {2003},
ADDRESS = {Rhodes},
PDF = {PDF/posch03:iasted.pdf},
ABSTRACT = { }
}

@INPROCEEDINGS{Williams03_CISST,
AUTHOR = {Denis Williams and Birgit M{\"o}ller and Stefan Posch},
TITLE = {Integrated System for a Visual Memory Based on Mosaics},
BOOKTITLE = {Proc. of International Conference on Imaging Science, Systems, and Technology (CISST'03)},
PUBLISHER = {CSREA Press},
EDITOR = {H.R. Arabnia and Youngsong Mun},
PAGES = {II: 633-639},
YEAR = {2003},
MONTH = {23.-26.June},
ADDRESS = {Las Vegas, USA},
ABSTRACT = { }
}

@INPROCEEDINGS{Moeller02:dagm,
AUTHOR = {Birgit M{\"o}ller and Stefan Posch},
TITLE = {Analysis of Object Interactions in Dynamic Scenes},
BOOKTITLE = {Pattern Recognition. 24.~DAGM-Symposium},
YEAR = {2002},
MONTH = {September},
EDITOR = {L. van Gool},
ADDRESS = {Zurich, Switzerland},
PAGES = {361-369},
SERIES = {LNCS 2449},
PUBLISHER = {Springer},
PDF = {PDF/Moeller02:dagm.pdf},
ABSTRACT = { }
}

@INPROCEEDINGS{Weitzenberg02:dagm,
AUTHOR = {J{\"o}rg Weitzenberg and Stefan Posch and Manfred Rost},
TITLE = {Analysis of Amperometric Biosensor Curves Using Hidden-Markov-Modells},
EDITOR = {Luc Van Gool},
BOOKTITLE = {Pattern Recognition. 24.~DAGM-Symposium},
YEAR = {2002},
PAGES = {182-189},
ABSTRACT = { }
}

@INPROCEEDINGS{Moeller01:dagm,
AUTHOR = {Birgit M{\"o}ller and Stefan Posch},
TITLE = {Detection and Tracking of Moving Objects for Mosaic Image Generation},
BOOKTITLE = {Pattern Recognition, Proc. of 23rd DAGM Symposium},
YEAR = {2001},
MONTH = {September},
EDITOR = {B. Radig and S. Florczyk},
ADDRESS = {Munich, Germany},
PAGES = {208-215},
SERIES = {LNCS 2191},
PUBLISHER = {Springer},
PDF = {PDF/Moeller01:dagm.pdf},
ABSTRACT = { }
}

@INPROCEEDINGS{Weitzenberg01:sensor,
AUTHOR = {J. Weitzenberg and S. Posch and C. Bauer and M. Rost and B. Gr{\"u}ndig},
TITLE = {Analysis of Amperometric Biosensor Data Using Fuzzy Logic and Discrete Hidden-Markov-Models},
BOOKTITLE = {SENSOR 2001},
YEAR = {2001},
EDITOR = {Tr{\"a}nkler, H.R.},
PAGES = {Volume II: 493-498},
ABSTRACT = { }
}

@INPROCEEDINGS{Schlueter00:icip,
AUTHOR = {Daniel Schl{\"u}ter and Sven Wachsmuth and Gerhard Sagerer and Stefan Posch},
TITLE = {Towards an Integrated Framework for Contour-Based Grouping and Object Recognition using Markov Random Fields},
BOOKTITLE = {Proc. International Conference on Image Processing},
YEAR = {2000},
ORGANIZATION = {IEEE},
PAGES = {100-103},
PS = {PS/Schlueter00:icip.ps},
VOLUME = {II}
}

@INPROCEEDINGS{Schlueter00:icpr,
AUTHOR = {Daniel Schl{\"u}ter and Franz Kummert and Gerhard Sagerer and Stefan Posch},
TITLE = {Integration of Regions and Contours for Object Recognition},
BOOKTITLE = {Proc. International Conference on Pattern Recognition},
YEAR = {2000},
ORGANIZATION = {IEEE},
PAGES = {944-947},
PS = {PS/Schlueter00:icpr.ps},
VOLUME = {1}
}

@INPROCEEDINGS{Williams00:dagm,
AUTHOR = {Denis Williams and Stefan Posch},
TITLE = {Stereozuordnung von hierachischen {K}onturgruppen mit {M}arkov {R}andom {F}ields},
BOOKTITLE = {Mustererkennug 2000. Proceedings 22.~DAGM-Symposium},
YEAR = {2000},
EDITOR = {Gerald Sommer and Norbert Kr{\"u}ger and Christian Perwass},
SERIES = {Informatik Aktuell},
ADRESS = {Berlin},
PUBLISHER = {Springer},
PAGES = {7-16}
}

@INPROCEEDINGS{Weitzenberg00:dagm,
AUTHOR = {J{\"o}rg Weitzenberg and Stefan Posch and Manfred Rost},
TITLE = {Diskrete {H}idden {M}arkov {M}odelle zur {A}nalyse von {M}e{\ss}kurven amperometrischer {B}iosensoren},
BOOKTITLE = {Mustererkennug 2000. Proceedings 22.~DAGM-Symposium},
YEAR = {2000},
EDITOR = {Gerald Sommer and Norbert Kr{\"u}ger and Christian Perwass},
SERIES = {Informatik Aktuell},
ADRESS = {Berlin},
PUBLISHER = {Springer},
PAGES = {317-324},
PS = {PS/Weitzenberg00:dagm.ps}
}

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